pocketutils
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Core utility classes
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biochem package
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pocketutils
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Index
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A
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B
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C
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D
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E
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F
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G
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H
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I
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J
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K
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L
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M
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N
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O
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P
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Q
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R
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S
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T
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U
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V
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W
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X
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Z
_
_bound_ticks
module
A
AbstractWrappedError
access_dt (pocketutils.tools.filesys_tools.PathInfo property)
add_path() (pocketutils.misc.loguru_utils.FancyLoguru method)
AlgorithmError
AlgorithmWarning
aliases (pocketutils.misc.loguru_utils.FancyLoguru property)
AlreadyUsedError
AmbiguousRequestError
angled() (pocketutils.core.chars.Chars class method)
args() (pocketutils.core.exceptions.ErrorUtils static method)
as_of (pocketutils.tools.filesys_tools.PathInfo attribute)
B
BadCommandError
BadWriteError
blue_white() (color_schemes.FancyCmaps class method)
blue_white_red() (color_schemes.FancyCmaps class method)
braced() (pocketutils.core.chars.Chars class method)
bracketed() (pocketutils.core.chars.Chars class method)
built_in() (pocketutils.misc.loguru_utils.FancyLoguru class method)
C
CacheLoadError
CacheSaveError
Capture (class in pocketutils.core.input_output)
Chars (class in pocketutils.core.chars)
check_expired() (pocketutils.tools.filesys_tools.FilesysTools class method)
CleverEnum (class in pocketutils.core.enums)
CodeIncompleteError
color_schemes
module
config_level() (pocketutils.misc.loguru_utils.FancyLoguru method)
config_levels() (pocketutils.misc.loguru_utils.FancyLoguru method)
config_main() (pocketutils.misc.loguru_utils.FancyLoguru method)
ConfigError
ConfigWarning
ConstructionError
ContradictoryRequestError
create_dt (pocketutils.tools.filesys_tools.PathInfo property)
D
DangerousRequestWarning
dangled() (pocketutils.core.chars.Chars class method)
darken_color() (color_schemes.FancyColorSchemes class method)
darken_palette() (color_schemes.FancyColorSchemes class method)
DataIntegrityError
DataWarning
DbLookupError
dbracketed() (pocketutils.core.chars.Chars class method)
delete_surefire() (pocketutils.tools.filesys_tools.FilesysTools class method)
DeprecatedWarning
DeviceConnectionError
DevNull (class in pocketutils.core.input_output)
DictNamespace (class in pocketutils.core)
DirDoesNotExistError
disable() (pocketutils.misc.loguru_utils.FancyLoguru method)
DisjointEnum (class in pocketutils.core.enums)
DownloadError
DownloadTimeoutError
dquoted() (pocketutils.core.chars.Chars class method)
dump_error() (pocketutils.tools.filesys_tools.FilesysTools class method)
E
emit() (pocketutils.misc.loguru_utils.InterceptHandler method)
EmptyCollectionError
enable() (pocketutils.misc.loguru_utils.FancyLoguru method)
Error
ErrorUtils (class in pocketutils.core.exceptions)
every() (pocketutils.misc.j.JFonts class method)
exactly() (pocketutils.core.dot_dict.NestedDotDict method)
exists (pocketutils.tools.filesys_tools.PathInfo property)
extended() (pocketutils.misc.loguru_utils.FancyLoguru class method)
F
FancyCmaps (class in color_schemes)
FancyColorSchemes (class in color_schemes)
FancyLoguru (class in pocketutils.misc.loguru_utils)
fig_savers
module
fig_tools
module
FigureSaver (class in fig_savers)
FileDoesNotExistError
FilesysTools (class in pocketutils.tools.filesys_tools)
filter() (pocketutils.misc.warning_utils.WarningsConfig class method)
filter_common() (pocketutils.misc.warning_utils.WarningsConfig class method)
FlagEnum (class in pocketutils.core.enums)
FlatGoTerm (class in pocketutils.biochem.uniprot_go)
from_cli() (pocketutils.misc.loguru_utils.FancyLoguru method)
frozenlist (class in pocketutils.core)
G
get() (pocketutils.core.dot_dict.NestedDotDict method)
get_ancestors_of_go_term() (pocketutils.biochem.uniprot_go.GoTermsAtLevel method)
get_as() (pocketutils.core.dot_dict.NestedDotDict method)
get_list_as() (pocketutils.core.dot_dict.NestedDotDict method)
get_path() (pocketutils.misc.loguru_utils.FancyLoguru method)
git_description() (pocketutils.tools.program_tools.ProgramTools class method)
GitDescription (class in pocketutils.tools.program_tools)
go_term_ancestors_for_uniprot_id() (pocketutils.biochem.uniprot_go.GoTermsAtLevel method)
go_term_ancestors_for_uniprot_id_as_df() (pocketutils.biochem.uniprot_go.GoTermsAtLevel method)
GoTermsAtLevel (class in pocketutils.biochem.uniprot_go)
grayscales() (color_schemes.FancyColorSchemes class method)
H
HandlerInfo (class in pocketutils.misc.loguru_utils)
HardwareError
has_access (pocketutils.tools.filesys_tools.PathInfo attribute)
has_read (pocketutils.tools.filesys_tools.PathInfo attribute)
has_write (pocketutils.tools.filesys_tools.PathInfo attribute)
hash_hex() (pocketutils.tools.filesys_tools.FilesysTools class method)
HashValidationError
I
IgnoringRequestWarning
IllegalPathError
IllegalStateError
ImmatureWarning
ImmutableError
ImportFailedWarning
IncompatibleDataError
InexactRoundError
InjectionError
intercept_std() (pocketutils.misc.loguru_utils.FancyLoguru method)
InterceptHandler (class in pocketutils.misc.loguru_utils)
InvalidFileType
items() (pocketutils.core.dot_dict.NestedDotDict method)
J
J (class in pocketutils.misc.j)
JFonts (class in pocketutils.misc.j)
K
keys() (pocketutils.core.dot_dict.NestedDotDict method)
L
leaves() (pocketutils.core.dot_dict.NestedDotDict method)
LengthError
LengthMismatchError
level() (pocketutils.biochem.tissue_expression.TissueTable method)
levels (pocketutils.misc.loguru_utils.FancyLoguru property)
link_stat (pocketutils.tools.filesys_tools.PathInfo attribute)
load() (pocketutils.biochem.tissue_expression.TissueTable class method)
LoadError
LockedError
logger (pocketutils.misc.loguru_utils.FancyLoguru property)
LoggerWithCautionAndNotice (class in pocketutils.misc.loguru_utils)
LogWriter (class in pocketutils.core.input_output)
LookupFailedError
M
main (pocketutils.misc.loguru_utils.FancyLoguru property)
mine() (pocketutils.misc.j.JFonts class method)
MismatchedDataError
MissingConfigKeyError
MissingDeviceError
MissingEnvVarError
MissingResourceError
mod_dt (pocketutils.tools.filesys_tools.PathInfo property)
mod_or_create_dt (pocketutils.tools.filesys_tools.PathInfo property)
module
_bound_ticks
color_schemes
fig_savers
fig_tools
pocketutils
pocketutils.biochem
pocketutils.biochem.atc_tree
pocketutils.biochem.multiwell_plate_rois
pocketutils.biochem.multiwell_plates
pocketutils.biochem.tissue_expression
pocketutils.biochem.uniprot_go
pocketutils.core
pocketutils.core._internal
pocketutils.core.chars
pocketutils.core.dot_dict
pocketutils.core.enums
pocketutils.core.exceptions
pocketutils.core.input_output
pocketutils.core.iterators
pocketutils.core.mocks
pocketutils.core.query_utils
pocketutils.full
pocketutils.misc
pocketutils.misc.j
pocketutils.misc.loguru_utils
pocketutils.misc.magic_template
pocketutils.misc.notifiers_utils
pocketutils.misc.resources
pocketutils.misc.typer_utils
pocketutils.misc.warning_utils
pocketutils.misc.web_resource
pocketutils.tools
pocketutils.tools.all_tools
pocketutils.tools.base_tools
pocketutils.tools.call_tools
pocketutils.tools.common_tools
pocketutils.tools.console_tools
pocketutils.tools.filesys_tools
pocketutils.tools.loop_tools
pocketutils.tools.numeric_tools
pocketutils.tools.path_tools
pocketutils.tools.program_tools
pocketutils.tools.reflection_tools
pocketutils.tools.string_tools
pocketutils.tools.sys_tools
pocketutils.tools.unit_tools
ref_dims
MultipleMatchesError
MultiTruth (class in pocketutils.core.enums)
N
NaturalExpectedError
NestedDotDict (class in pocketutils.core.dot_dict)
never() (pocketutils.misc.warning_utils.WarningsConfig class method)
nicesize() (in module pocketutils.core._internal)
NotConstructableError
Notifier (class in pocketutils.misc.notifiers_utils)
NullValueError
NumericConversionError
O
ObsoleteWarning
of() (pocketutils.core.enums.CleverEnum class method)
(pocketutils.core.enums.DisjointEnum class method)
(pocketutils.core.enums.FlagEnum class method)
once() (pocketutils.misc.warning_utils.WarningsConfig class method)
one() (pocketutils.misc.j.JFonts class method)
open_file() (pocketutils.tools.filesys_tools.FilesysTools class method)
OpenMode (class in pocketutils.core.input_output)
OpStateError
OptRow (class in pocketutils.core)
or_none() (pocketutils.core.enums.DisjointEnum class method)
(pocketutils.core.enums.FlagEnum class method)
OutOfRangeError
P
parened() (pocketutils.core.chars.Chars class method)
parse() (pocketutils.biochem.uniprot_go.FlatGoTerm class method)
parse_json() (pocketutils.core.dot_dict.NestedDotDict class method)
ParsingError
ParsingWB0 (class in pocketutils.biochem.multiwell_plates)
ParsingWB1 (class in pocketutils.biochem.multiwell_plates)
PathError
PathExistsError
PathInfo (class in pocketutils.tools.filesys_tools)
PathIsNotADirError
PathIsNotAFileError
paths (pocketutils.misc.loguru_utils.FancyLoguru property)
pocketutils
module
pocketutils.biochem
module
pocketutils.biochem.atc_tree
module
pocketutils.biochem.multiwell_plate_rois
module
pocketutils.biochem.multiwell_plates
module
pocketutils.biochem.tissue_expression
module
pocketutils.biochem.uniprot_go
module
pocketutils.core
module
pocketutils.core._internal
module
pocketutils.core.chars
module
pocketutils.core.dot_dict
module
pocketutils.core.enums
module
pocketutils.core.exceptions
module
pocketutils.core.input_output
module
pocketutils.core.iterators
module
pocketutils.core.mocks
module
pocketutils.core.query_utils
module
pocketutils.full
module
pocketutils.misc
module
pocketutils.misc.j
module
pocketutils.misc.loguru_utils
module
pocketutils.misc.magic_template
module
pocketutils.misc.notifiers_utils
module
pocketutils.misc.resources
module
pocketutils.misc.typer_utils
module
pocketutils.misc.warning_utils
module
pocketutils.misc.web_resource
module
pocketutils.tools
module
pocketutils.tools.all_tools
module
pocketutils.tools.base_tools
module
pocketutils.tools.call_tools
module
pocketutils.tools.common_tools
module
pocketutils.tools.console_tools
module
pocketutils.tools.filesys_tools
module
pocketutils.tools.loop_tools
module
pocketutils.tools.numeric_tools
module
pocketutils.tools.path_tools
module
pocketutils.tools.program_tools
module
pocketutils.tools.reflection_tools
module
pocketutils.tools.string_tools
module
pocketutils.tools.sys_tools
module
pocketutils.tools.unit_tools
module
point() (ref_dims.RefDims method)
prep_dir() (pocketutils.tools.filesys_tools.FilesysTools class method)
prep_file() (pocketutils.tools.filesys_tools.FilesysTools class method)
pretty_str() (pocketutils.core.dot_dict.NestedDotDict method)
ProgramTools (class in pocketutils.tools.program_tools)
Q
qualitative_tol_dark_mod_6() (color_schemes.FancyColorSchemes class method)
qualitative_tol_high_contrast_6() (color_schemes.FancyColorSchemes class method)
qualitative_tol_muted_9() (color_schemes.FancyColorSchemes class method)
qualitative_tol_vibrant_6() (color_schemes.FancyColorSchemes class method)
qualitiative_26() (color_schemes.FancyColorSchemes class method)
query_obo_term() (pocketutils.biochem.uniprot_go.GoTermsAtLevel method)
QueryExecutor (class in pocketutils.core.query_utils)
R
read_any() (pocketutils.tools.filesys_tools.FilesysTools class method)
read_compressed_text() (pocketutils.tools.filesys_tools.FilesysTools class method)
read_json() (pocketutils.core.dot_dict.NestedDotDict class method)
read_lines_file() (pocketutils.tools.filesys_tools.FilesysTools class method)
read_pickle() (pocketutils.core.dot_dict.NestedDotDict class method)
read_properties_file() (pocketutils.tools.filesys_tools.FilesysTools class method)
real_stat (pocketutils.tools.filesys_tools.PathInfo attribute)
recent_messages (pocketutils.misc.loguru_utils.FancyLoguru property)
ref_dims
module
RefDims (class in ref_dims)
RefusingError
RefusingRequestError
remember() (pocketutils.misc.loguru_utils.FancyLoguru method)
remove_path() (pocketutils.misc.loguru_utils.FancyLoguru method)
remove_paths() (pocketutils.misc.loguru_utils.FancyLoguru method)
replace_in_file() (pocketutils.tools.filesys_tools.FilesysTools class method)
req_as() (pocketutils.core.dot_dict.NestedDotDict method)
req_list_as() (pocketutils.core.dot_dict.NestedDotDict method)
RequestError
ReservedError
resolved (pocketutils.tools.filesys_tools.PathInfo attribute)
ResourceError
rewire_streams_to_utf8() (pocketutils.misc.loguru_utils.FancyLoguru method)
S
save() (fig_savers.FigureSaver method)
save_all() (fig_savers.FigureSaver method)
save_all_as_pdf() (fig_savers.FigureSaver method)
save_one() (fig_savers.FigureSaver method)
SaveError
Sentinel (class in pocketutils.core)
SeqIterator (class in pocketutils.core.iterators)
set_control() (pocketutils.misc.loguru_utils.FancyLoguru method)
shelled() (pocketutils.core.chars.Chars class method)
simplify_format() (pocketutils.misc.warning_utils.WarningsConfig class method)
SizedIterator (class in pocketutils.core.iterators)
source (pocketutils.tools.filesys_tools.PathInfo attribute)
squoted() (pocketutils.core.chars.Chars class method)
StrangeRequestWarning
StringPatternError
styled() (pocketutils.misc.j.J class method)
sub() (pocketutils.core.dot_dict.NestedDotDict method)
sub_opt() (pocketutils.core.dot_dict.NestedDotDict method)
T
TickBounder (class in _bound_ticks)
TieredIterator (class in pocketutils.core.iterators)
TissueTable (class in pocketutils.biochem.tissue_expression)
tmpfile() (pocketutils.tools.filesys_tools.FilesysTools class method)
tmppath() (pocketutils.tools.filesys_tools.FilesysTools class method)
to_json() (pocketutils.core.dot_dict.NestedDotDict method)
to_toml() (pocketutils.core.dot_dict.NestedDotDict method)
Tools (class in pocketutils.tools.all_tools)
trash() (pocketutils.tools.filesys_tools.FilesysTools class method)
TrueFalseEither (class in pocketutils.core.enums)
try_cleanup() (pocketutils.tools.filesys_tools.FilesysTools class method)
U
UnrecognizedKeyError
UnsupportedOpError
UploadError
UserError
V
values() (pocketutils.core.dot_dict.NestedDotDict method)
W
WarningsConfig (class in pocketutils.misc.warning_utils)
WB0 (class in pocketutils.biochem.multiwell_plates)
WB1 (class in pocketutils.biochem.multiwell_plates)
WebResource (class in pocketutils.misc.web_resource)
white_black() (color_schemes.FancyCmaps class method)
white_blue() (color_schemes.FancyCmaps class method)
white_red() (color_schemes.FancyCmaps class method)
write_compressed_text() (pocketutils.tools.filesys_tools.FilesysTools class method)
write_json() (pocketutils.core.dot_dict.NestedDotDict method)
write_lines() (pocketutils.tools.filesys_tools.FilesysTools class method)
write_pickle() (pocketutils.core.dot_dict.NestedDotDict method)
write_properties_file() (pocketutils.tools.filesys_tools.FilesysTools class method)
write_toml() (pocketutils.core.dot_dict.NestedDotDict method)
WrongDimensionError
X
XException
XFileExistsError
XKeyError
XTypeError
XValueError
XWarning
Z
ZeroDistanceError
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