biochem package
WB1
is a multiwell plate with 1-based coordinates (read well
base-1).
from pocketutils.biochem.multiwell_plates import WB1
wb1 = WB1(8, 12) # 96-well plate
print(wb1.index_to_label(13)) # prints "B01"
for well in wb1.block_range("A01", "H11"):
print(well) # prints "A01", "A02", etc.
Getting tissue-specific expression data in humans:
from pocketutils.biochem.tissue_expression import TissueTable
tissues = TissueTable()
# returns a Pandas DataFrame of expression levels per cell type per gene for this tissue.
tissues.tissue("MKNK2")